Publications
Overview of our Journal and Conference Papers:
Listed by year
2026
Rational design of mechanically active RNAs: de novo engineering of functional exoribonuclease-resistant RNAs. / Sidl, Leonhard (Corresponding author); Walter, Jule; Gutenbrunner, Katrin et al.
In: Nucleic Acids Research, Vol. 54, No. 9, gkag473, 22.05.2026.
Publications: Contribution to journal › Article › Peer Reviewed
MicroRNA-Mediated Obstruction of Stem-loop Alternative Splicing (MIMOSAS) regulates long-range alternative splicing in Drosophila. / Ruan, Kai; Liu, Jiaqi; Xia, Melanie et al.
In: Nucleic Acids Research, Vol. 54, No. 7, 13.04.2026.
Publications: Contribution to journal › Article › Peer Reviewed
2025
Cell-type-specific requirement for TYK2 in murine immune cells under steady state and challenged conditions. / Karjalainen, Anzhelika; Witalisz-Siepracka, Agnieszka; Prchal-Murphy, Michaela et al.
In: Cellular and Molecular Life Sciences, Vol. 82, No. 1, 98, 12.2025.
Publications: Contribution to journal › Article › Peer Reviewed
Transit functions and pyramid-like binary clustering systems (vol 357, pg 365, 2024). / Changat, Manoj; Shanavas, Ameera Vaheeda; Stadler, Peter F. (Corresponding author).
In: Discrete Applied Mathematics, Vol. 371, 15.08.2025, p. 280.
Publications: Contribution to journal › Correction › Peer Reviewed
From structure to function: Computational insights into Musashi-RNA complexes in the context of viral pathogenesis and beyond. / Darai, Nitchakan; Sidl, Leonhard; Rungrotmongkol, Thanyada et al.
In: ScienceAsia, Vol. 51S, No. 1, 2025s013, 05.2025.
Publications: Contribution to journal › Review › Peer Reviewed
Computational complexity, algorithmic scope, and evolution. / Sidl, Leonhard; Faissner, Maximilian; Uhlir, Manuel et al.
In: Journal of Physics: Complexity, Vol. 6, No. 1, 015013, 01.03.2025.
Publications: Contribution to journal › Article › Peer Reviewed
Identification of conserved RNA regulatory switches in living cells using RNA secondary structure ensemble mapping and covariation analysis. / Borovská, Ivana; Zhang, Chundan; Dülk, Sarah Luisa J. et al.
In: Nature Biotechnology, 2025.
Publications: Contribution to journal › Article › Peer Reviewed
Old Dog, New Tricks: Exact Seeding Strategy Improves RNA Design Performances. / Boury, Théo; Sidl, Leonhard; Hofacker, Ivo L. et al.
Research in Computational Molecular Biology - 29th International Conference, RECOMB 2025, Proceedings. ed. / Sriram Sankararaman. Springer Science and Business Media Deutschland GmbH, 2025. p. 134-152 (Lecture Notes in Computer Science, Vol. 15647 LNBI).
Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
2024
Pan-flavivirus analysis reveals sfRNA-independent, 3' UTR-biased siRNA production from an insect-specific flavivirus. / Besson, Benoit; Overheul, Gijs J; Wolfinger, Michael T et al.
In: Journal of Virology, Vol. 98, No. 11, 19.11.2024, p. e0121524.
Publications: Contribution to journal › Article › Peer Reviewed
Gentrius: Generating Trees Compatible With a Set of Unrooted Subtrees and its Application to Phylogenetic Terraces. / Chernomor, Olga; Elgert, Christiane; von Haeseler, Arndt.
In: Molecular Biology and Evolution, Vol. 41, No. 11, msae219, 01.11.2024.
Publications: Contribution to journal › Article › Peer Reviewed